Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVEPDVETLDPPLPPVPDGAVMVTVKIARFNPDDPDAFAATGGWQSFRVP---CLPSDRLLNLLIYIKGYLDGTLTFRRSCAHGVCGSDAMRINGVNRLACKVLMRDLLPKKKGKSLTVTVEPIRGLPVEKDLVVDMEPFFDAYRAIKPYLIT--SGNPPTRERIQSPTDRARYDDTTKCILCACCTTSCPVFWHEG-SYFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVWRCRTTFNCTESCPRGIEVTKAIQEVKRALMFTR
1ZP0 Chain:B ((20-242))
----------------------------------DPDKTGDKPHMQTYEIDLNNCGP--MVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDK------VSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMM----
General information:
TITO was launched using:
RESULT:
Template:
1ZP0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135185 for 1606 contacts (-84.2/contact) +
2D Compatibility (PS) -23107 + (NN) -11784 + (LL) 2012
1D Compatibility (HY) -19200 + (ID) 4650
Total energy: -191914.0 ( -119.50 by residue)
QMean score : 0.376
(partial model without unconserved sides chains):
PDB file :
Tito_1ZP0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZP0-query.scw
PDB file :
Tito_Scwrl_1ZP0.pdb
: