Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIRSYQGKTPLLGERVFVDPSAVLVGDIEIGADSSVWPLVVIRGDMHRIRIGQRSSIQDGSVLHITHAGPFNPDGFPLSIGDEVTVGHKVLLHGCSIGNRVLVGMGSIVMDGAVIEDEVILGAGSLVPPGKVLESGFLYVGSPAKKARPLSDKERGFFAYTAGNYVKLKDLHIAEDYHA
1XHD Chain:A ((4-172))
-MIYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQ-------YPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKDMERIRTQYVEKGQYYKSLQ---
General information:
TITO was launched using:
RESULT:
Template:
1XHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147977 for 1426 contacts (-103.8/contact) +
2D Compatibility (PS) -19065 + (NN) -11395 + (LL) -160
1D Compatibility (HY) -10400 + (ID) 3200
Total energy: -192197.0 ( -134.78 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1XHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XHD-query.scw
PDB file :
Tito_Scwrl_1XHD.pdb
: