Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDYQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFEN---ARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQGAFDDPRLNLVIDDGMRFV-ATTEERFDVIISDSTDPIGPGEVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTA--ARTDGLFADWHFYQAAVPTYIGGAMTFAWGSTHEGLR-RLPLETLRQRFRDSGIAT--RYYNADIHLGAFALPQYVLQAIGKQDND
4YUZ Chain:A ((27-296))
--------WPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR-SLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTT------------AFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETG-FASVQYALMHVPTYPCGSIGTLVCSKKAGVDVTKPLRPV----EDMPFAKDLKYYDSEMHKASFALPRFARHINN-----
General information:
TITO was launched using:
RESULT:
Template:
4YUZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163752 for 2097 contacts (-78.1/contact) +
2D Compatibility (PS) -26818 + (NN) -11662 + (LL) 2124
1D Compatibility (HY) -24400 + (ID) 4900
Total energy: -229408.0 ( -109.40 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_4YUZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YUZ-query.scw
PDB file :
Tito_Scwrl_4YUZ.pdb
: