Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRH---PRIRREELDITDSQRLQRLFEALPR----LDVLVNNAGISRD------REEYDLATFERVLRLNLSAAM-LASQLARPLLAQRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGYLCA
4I08 Chain:A ((12-247))
---------GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEE----EWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDM----N-DEQRTATLAQ-VPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGG----
General information:
TITO was launched using:
RESULT:
Template:
4I08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124665 for 1824 contacts (-68.3/contact) +
2D Compatibility (PS) -23976 + (NN) -12521 + (LL) 2084
1D Compatibility (HY) -16000 + (ID) 4100
Total energy: -179178.0 ( -98.23 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_4I08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I08-query.scw
PDB file :
Tito_Scwrl_4I08.pdb
: