Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRPLVAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENAE-VAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS
1SSG Chain:B ((3-245))
-RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAK-IGVAAQNCYKVP-KGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADN--VKDWSKVVLAYEPVWAIGTGYSLTPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKP-EFVDIINA---
General information:
TITO was launched using:
RESULT:
Template:
1SSG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152266 for 2090 contacts (-72.9/contact) +
2D Compatibility (PS) -26176 + (NN) -8700 + (LL) 432
1D Compatibility (HY) -17200 + (ID) 5450
Total energy: -209360.0 ( -100.17 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1SSG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSG-query.scw
PDB file :
Tito_Scwrl_1SSG.pdb
: