Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLIVHAHNEPQSFTRALCDQACETLAGQGHAVQVSDLYAMNWNPVASAADFAER-ADPDYLVYALEQRESVKRQSLAADIQAELDKLLWADLLILNFPIYWFSVPAILKGWFDRVLVSGVCYGGKRFYDQGGLAGKKALVSLTLGGRQHMFGEGAIHGPLEDMLRPILRGTLAYVGMQVLEPFVAWHVPYISEEARGNFLRAYRARLENLEQDVPLRFPRLEQFDALLQPLAR
3NFR Chain:B ((4-220))
-KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI-----------------
General information:
TITO was launched using:
RESULT:
Template:
3NFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172349 for 1678 contacts (-102.7/contact) +
2D Compatibility (PS) -23130 + (NN) -8860 + (LL) 1752
1D Compatibility (HY) -22000 + (ID) 4700
Total energy: -229287.0 ( -136.64 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_3NFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NFR-query.scw
PDB file :
Tito_Scwrl_3NFR.pdb
: