Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MENEFTYEDYETTAKWLLQHTEYRPQVAVICGSGLGGLTAHLKEAQIFDYNEIPNFPQSTVQGHAGRLVFGLLNGRCCVMMQGRFHMYEGYSLSKVTFPVRVFHLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFCGQNPLRGPNDERFGVRFPAMSDAYDRDMRQKAFTAWKQMGEQRKLQEGTYVMLAGPNFETVAESRLLKMLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVVMDYENLEKANHMEVLDAGKAAAQTLERFVSILMESIPLPDRGS
1TCV Chain:A ((6-286))
---TANIENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTS---HSGNLIFGTLSGRKVVVMQGRFHMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRSLKLGDFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGFGNLVHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTNISVLDVESD-----------GAQRAELMQSWFEKIIEKLPK-----
General information:
TITO was launched using:
RESULT:
Template:
1TCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -205905 for 2295 contacts (-89.7/contact) +
2D Compatibility (PS) -29092 + (NN) -17602 + (LL) 1080
1D Compatibility (HY) -26800 + (ID) 6300
Total energy: -284619.0 ( -124.02 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_1TCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TCV-query.scw
PDB file :
Tito_Scwrl_1TCV.pdb
: