Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVLRLFLKYGQNDERVITGLKRISKPGLRVYAKASEMPKVLNGLGIALVSTSEGVITDKEARKRNVGGEIIAYVW
1SEI Chain:A ((1-130))
-VMTDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYG-PNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI
General information:
TITO was launched using:
RESULT:
Template:
1SEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69143 for 951 contacts (-72.7/contact) +
2D Compatibility (PS) -13785 + (NN) -2289 + (LL) 328
1D Compatibility (HY) -17600 + (ID) 5050
Total energy: -107539.0 ( -113.08 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_1SEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SEI-query.scw
PDB file :
Tito_Scwrl_1SEI.pdb
: