Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKIRLKLKAYDHRVLDRSVVAIVEAVKRSGSEIRGPIPLPTKNKRYTVLRSPHVNKDSREQFEIRVYSRLIDIISATPETVDSLMKLDLAPEVDVEVTSMETK
3R2D Chain:J ((5-80))
-EKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRKSE---------------------FSRILDIIRFTPQTIEALMEISLPAGVDVEVKMR---
General information:
TITO was launched using:
RESULT:
Template:
3R2D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35266 for 511 contacts (-69.0/contact) +
2D Compatibility (PS) -7860 + (NN) -2993 + (LL) 2056
1D Compatibility (HY) -10000 + (ID) 2200
Total energy: -56263.0 ( -110.10 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_3R2D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R2D-query.scw
PDB file :
Tito_Scwrl_3R2D.pdb
: