Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLLLLTLPLLSSLVHAAPSLAMPREGIVGGQEASGNKWPWQVSLRVNDTYWMHFCGGSLIHPQWVLTAAHCVGPNKADPNKLRVQLRKQYLYY---HDHLLTVSQIISHPDFYIAQDGADIALLKLTNPVNITSNVHTVSLPPASETFPSGTLCWVTGWGNINNDVSLPPPFPLEEVQVPIVENRLCDLKYHKGLNTGDNVHIVRDDMLCAGN--EGHDSCQGDSGGPLVCKVEDTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIYRYVPKYF
3BG8 Chain:A ((1-236))
----------------------------IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDK--IQNTLQKAKIPLVTNEECQKRYRG--------HKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ---
General information:
TITO was launched using:
RESULT:
Template:
3BG8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139105 for 1974 contacts (-70.5/contact) +
2D Compatibility (PS) -25555 + (NN) -18656 + (LL) 2572
1D Compatibility (HY) -13600 + (ID) 4950
Total energy: -199294.0 ( -100.96 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_3BG8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BG8-query.scw
PDB file :
Tito_Scwrl_3BG8.pdb
: