Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTS------HVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKE----------------APKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPIN---HRLFVTRIL-HEFESDTFFPEIDYK-------DFKLLTEYPGVPADIQE--EDGIQYKFEVYQKSVLAQ
3RG9 Chain:A ((26-239))
LRPFSVVVASDEKGGIGDGGTIPWE-IPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDV-VAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHRTVVRPASNSCSVFFDIPAAGTKTPEGLELVRE----SITDERVSTGAGGKKYQFEKLVPR----
General information:
TITO was launched using:
RESULT:
Template:
3RG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103377 for 1353 contacts (-76.4/contact) +
2D Compatibility (PS) -19531 + (NN) -6603 + (LL) 744
1D Compatibility (HY) -10000 + (ID) 2850
Total energy: -141617.0 ( -104.67 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3RG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RG9-query.scw
PDB file :
Tito_Scwrl_3RG9.pdb
: