Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTT
3MUP Chain:A ((11-103))
----------------SISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRY----------
General information:
TITO was launched using:
RESULT:
Template:
3MUP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26284 for 648 contacts (-40.6/contact) +
2D Compatibility (PS) -10037 + (NN) -7615 + (LL) 1168
1D Compatibility (HY) -7600 + (ID) 2200
Total energy: -52568.0 ( -81.12 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_3MUP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MUP-query.scw
PDB file :
Tito_Scwrl_3MUP.pdb
: