Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRSTVPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPDKAS
1TCV Chain:A ((5-286))
--VTANIENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTS---HSGNLIFGTLSGRKVVVMQGRFHMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRSLKLGDFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGFGNLVHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTNISVLDVESD-----------GAQRAELMQSWFEKIIEKLPK-----
General information:
TITO was launched using:
RESULT:
Template:
1TCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -197562 for 2310 contacts (-85.5/contact) +
2D Compatibility (PS) -29332 + (NN) -20574 + (LL) 1296
1D Compatibility (HY) -28000 + (ID) 6300
Total energy: -280472.0 ( -121.42 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_1TCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TCV-query.scw
PDB file :
Tito_Scwrl_1TCV.pdb
: