Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEMSVTEVIFSFLGGLGIFLYGLKIMGDGLQASAGDRLRDILNKFTSNPVLGVIAGIVVTILIQSSSGTTVITIGLVTAGFMTLKQAIGVIMGANIGTTVTAFIIGIDLGEYAMPILALGAFLIFFFKRSKINNIGRILFGFGSLFFGLEFMGDAVKPLASLDGFKQLMLDMSSNPILAVIVGAGLTALVQSSSATIGILQEFYQQDLISLNAAIPVLLGDNIGTTITAILASLAGSIAAKRAALVHVIFNLIGVIIFTIFLPVVIHLISLLQDVWHLKPAMTIAVSHGIFNITNTLIQLPFVAGLAWIVTKLVPGKDIADDYKPQHLNKDLVYHAPGVALQETQKELQNVGQIVLSMFEDIREI-TKDD----KKLIKKLEQKHQAVETINDSIRNYLVRISTKAITKADVERLAVMFDVNRSILKVAELTEEYVAQLKRQHDEDIRITEDAQRGMDKLFNHVAESFDKAIDMLDV--YD----KTKKDEIVERSRESFNIEHKLRKGHIKRLNRGECTTKGGLLYIDMIGVLERIGYHSRNVSEALVGLNDDVPTDEEIATTEI |
| 3L39 Chain:A ((28-223)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FFPLLKQLSDVLSASSVLLVESMEHDLPTERADYYKQIKDMEREGDRLTHLIFDELSTTFI-TPFD--RE---DIHDLASCMDDVIDGINSSAKRIVIYNP---RPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDVYELFITKLFEEE----KDCIELIKIKEIMHELEKTTDAAEHVGKILKNLI-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3L39.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45883 for 1433 contacts (-32.0/contact) +
2D Compatibility (PS) -19616 + (NN) -8843 + (LL) 28808
1D Compatibility (HY) -1200 + (ID) 1050
Total energy: -47784.0 ( -33.35 by residue)
QMean score : 0.533
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