Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLV-K----DYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
3V9P Chain:A ((24-226))
RGKFITFEGID---KTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ-PMDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP----ESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA-----
General information:
TITO was launched using:
RESULT:
Template:
3V9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59011 for 1415 contacts (-41.7/contact) +
2D Compatibility (PS) -20916 + (NN) -10699 + (LL) 504
1D Compatibility (HY) -9600 + (ID) 3300
Total energy: -103022.0 ( -72.81 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_3V9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9P-query.scw
PDB file :
Tito_Scwrl_3V9P.pdb
: