Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
3DHQ Chain:A ((7-135))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPEFN------EKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLRYIYADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
3DHQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46760 for 1026 contacts (-45.6/contact) +
2D Compatibility (PS) -13608 + (NN) -1961 + (LL) 6020
1D Compatibility (HY) -16000 + (ID) 6150
Total energy: -78459.0 ( -76.47 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_3DHQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DHQ-query.scw
PDB file :
Tito_Scwrl_3DHQ.pdb
: