Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
3QB3 Chain:A ((9-135))
---------------------------------------------KEPATLIKAIDGDTVKAMYKGQPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYKY-ADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS-
General information:
TITO was launched using:
RESULT:
Template:
3QB3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8420 for 990 contacts (-8.5/contact) +
2D Compatibility (PS) -13274 + (NN) -3745 + (LL) 3536
1D Compatibility (HY) -8800 + (ID) 2450
Total energy: -33153.0 ( -33.49 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_3QB3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QB3-query.scw
PDB file :
Tito_Scwrl_3QB3.pdb
: