Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKKSVRHIKIREIISNEQIETQDELVKRLNDYDLNVTQATVSRDIKELQLIKVPIPSGQYVYSLPNDRKFHPLEKLGRYLMDSFVNIDGTDNLLVLKTLPGNAQSIGAILDQINWEEVLGTICGDDTCLIICRSKEASDEIKSRIFNLL
1B4B Chain:A ((2-71))
--------------------------------------------------------------------------------LVDVFIKLDGTGNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTCLIICRTPKDAKKVSNQLLSML
General information:
TITO was launched using:
RESULT:
Template:
1B4B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60633 for 503 contacts (-120.5/contact) +
2D Compatibility (PS) -7675 + (NN) -687 + (LL) 5740
1D Compatibility (HY) -11600 + (ID) 1900
Total energy: -76755.0 ( -152.59 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_1B4B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B4B-query.scw
PDB file :
Tito_Scwrl_1B4B.pdb
: