Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRYTKSEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMD-HGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLEN----KLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTG------RNKIVKFEGCYHGHSDSLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPYNDLDALKIAFEKFGDDIAGVIVEPVAGNMGVVPPIEGFLQGLRDITTEYGALLIFDEVMTGF-RVGYHCAQGYFGVTPDLTCLGKVIGGGLPVGAFGGKKEIMD--HIAPLGNIYQAGTLSGNPLAMTSGYETLSQLTPETYEYFNMLGDILEDGLKRVFAKHNVPITVNRAGSMIGYFLNEGPVTNFEQANKSDLKLFAEMYREMAKEGVFLPPSQFEGTFLSTAHTKEDIEKTIQAFDTALSRIVK |
2PB0 Chain:A ((35-306)) | ------------------------------VYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGE--TLWHTSNVFTNEPALRLGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPA-------DIIHVPFNDLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAF-----GSTY-----GGNPLA-------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PB0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98099 for 2051 contacts (-47.8/contact) +
2D Compatibility (PS) -27882 + (NN) -12708 + (LL) 11636
1D Compatibility (HY) -13200 + (ID) 5000
Total energy: -145253.0 ( -70.82 by residue)
QMean score : 0.471
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