Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALVVKDIVKNFGEGLSETKVLKGINFEVEQGEFVILNGASGSGKTTLLTILGGLLSQTSGTVLYNDAPLFDKQHRPSDLRLEDIGFIFQSSHLVPYLKVIEQLTL-VGQEAGMTKQQSSTRAIQLLKNIGLEDRLNVYPHQLSGGEKQRVAIMRAFMNNPKIILADEPTASLDADRATKVVEMIRQQIKEQQMI--------GIMITHDR-RLFEYADRVIELEDGKITD
3FVQ Chain:A ((4-222))
-ALHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN-LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQ-RIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD--------EQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRI--
General information:
TITO was launched using:
RESULT:
Template:
3FVQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98805 for 1593 contacts (-62.0/contact) +
2D Compatibility (PS) -22652 + (NN) -9960 + (LL) 844
1D Compatibility (HY) -15600 + (ID) 3700
Total energy: -149873.0 ( -94.08 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_3FVQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FVQ-query.scw
PDB file :
Tito_Scwrl_3FVQ.pdb
: