Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSD-KDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA
1SNF Chain:B ((25-156))
--LAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLA------------
General information:
TITO was launched using:
RESULT:
Template:
1SNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68186 for 879 contacts (-77.6/contact) +
2D Compatibility (PS) -13690 + (NN) -140 + (LL) 84
1D Compatibility (HY) -8800 + (ID) 2500
Total energy: -93232.0 ( -106.07 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_1SNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SNF-query.scw
PDB file :
Tito_Scwrl_1SNF.pdb
: