Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LQNYSKSEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKGAYITDVDGNEYIDYVLSWGPLILGHTDPAVVNAITKAA--LKGTSFGTPTEIETELAKLVIERVPSIEIVRMVSSGTEATMSAIRLARGYTK------REKILKFEGSYHGHGDSLLIKAGSGVATLGLPDSPGVTKGLA---ADTITVPYNDIEGAKLAFEKYGEEIAAVIVEPVAGNMGVVPPIEGFLEGLRELTTKFGSLLIFDEVMTGF-RVDYYSAQGYYVVTPDLTCLGKVIGGGLPVGAYGGKKEIME--QIAPAGSIYQAGTLSGNPLAM---NAGFETVRQLTPQHYDVFRTLIKRMEEGLTEISARRQVPLSINKAGSMFGFFFTDQKVINFDTAKTSNLEFFRNYYREMLGQGIFLPPSQFEGVFISTMHTENEIDKTLEAFDTTCKILRG |
| 4JEY Chain:B ((46-358)) | -----------------------------------------GKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGR--SLF--------TVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMD---DHTCAVVVEPIQGAGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTY-----GGNPLACAVAGATFDIIN--TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIG----------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JEY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126246 for 2443 contacts (-51.7/contact) +
2D Compatibility (PS) -32361 + (NN) -14633 + (LL) 7884
1D Compatibility (HY) -16400 + (ID) 5350
Total energy: -187106.0 ( -76.59 by residue)
QMean score : 0.485
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