Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDKIAVIPGTFDPITNGHLDIIERAAKIFDVLYVSVLNNSSKKPLFTIEERMEMIRQVTAHLPNVQVESASGLTVDYAATRGATAIVRGLRAVSDFEYEMQIASMNRTLNADIETFFVMTNTKYSFLSSSMVKEVAQYQGDISELVPEIVNKAVQAKFK
3OTW Chain:A ((9-154))
---KIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFKNVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPK-----------
General information:
TITO was launched using:
RESULT:
Template:
3OTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94899 for 1109 contacts (-85.6/contact) +
2D Compatibility (PS) -16075 + (NN) -8629 + (LL) 1200
1D Compatibility (HY) -15200 + (ID) 3200
Total energy: -136803.0 ( -123.36 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_3OTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OTW-query.scw
PDB file :
Tito_Scwrl_3OTW.pdb
: