Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDDCIFCKIVRGEIPSAKVYEDDEVYAFLDLGQVTEGHTLVIPKKHARNTFDLPDETAAELFRRVPKIARALKE-ALPIQGLNILNNNEEVAFQSVFHCHIHLIPRYSKSDDFGLKWKDNADWYTQERYQEIAELIAAKVD
3O0M Chain:A ((5-140))
-MSCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGD-KLSF--------RRDPDREESGRLLRAAL-
General information:
TITO was launched using:
RESULT:
Template:
3O0M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78743 for 955 contacts (-82.5/contact) +
2D Compatibility (PS) -14035 + (NN) -7002 + (LL) 408
1D Compatibility (HY) -7600 + (ID) 2500
Total energy: -109472.0 ( -114.63 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_3O0M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O0M-query.scw
PDB file :
Tito_Scwrl_3O0M.pdb
: