Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVAVHYAGNKAKAETLVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVINTAGIMKLSPIATLDMDDFDLIQRTNVRGTFVVSKQA--ALRVRNGGAIINFSTSVTRTSFPTYGAYVASKAGVESLTLILARELRGKDITVNAVAPGPTATPLFLTGKDDKTIDNLAKATPLERLGQPEDIAETVAFLAGPARWVNGQVIFT-NGGLA
3VZP Chain:B ((12-254))
-STQRIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFRKMTRADWDAVIDTNLTSLFNVTKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQD-VLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGGL-
General information:
TITO was launched using:
RESULT:
Template:
3VZP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120299 for 2021 contacts (-59.5/contact) +
2D Compatibility (PS) -26098 + (NN) -12132 + (LL) 416
1D Compatibility (HY) -12400 + (ID) 4050
Total energy: -174563.0 ( -86.37 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3VZP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZP-query.scw
PDB file :
Tito_Scwrl_3VZP.pdb
: