Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLVATAP-RVAVLVEYNDREVLEDEVKIKVQFASPKHGTEVVDFRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIVCS------------------------------YGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYD-PAQFAMSGVRDAHVRAGDYVVVVGL-GAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTDVGLEVKRLTGKLGADSIIETSGNAAALQAALRGIAYGGTISYVAFAKPFPEGFNLGREAHFNNAKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMKYVDQQPDLSIKMGITL |
1JVB Chain:A ((1-347)) | MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCH-SDVHMRQGRFGNLRIVE---------------DLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPH-YK--YMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHA-PLITLSEIQFVGSLVGN-----------QSDFLGIMRLAEAGKVK--PMITKTMKLEEANEAIDN-LENFK-AIGRQVLIP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JVB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137541 for 2740 contacts (-50.2/contact) +
2D Compatibility (PS) -33656 + (NN) -4283 + (LL) 828
1D Compatibility (HY) -5600 + (ID) 3350
Total energy: -183602.0 ( -67.01 by residue)
QMean score : 0.395
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