Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVMTDPIADFLTRIRNANQAKHEVLEVPASNIKKGIADILKREGFVKNVEVIEDDKQGIIRVFLKYGQNGERVITNLKRISKPGLRVYTKHEDMPKVLNGLGIAIVSTSEGLLTDKEARQKNVGGEVLAYIW
1SEI Chain:A ((1-130))
-VMTDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGP-NERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI
General information:
TITO was launched using:
RESULT:
Template:
1SEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78213 for 951 contacts (-82.2/contact) +
2D Compatibility (PS) -14093 + (NN) -3298 + (LL) 128
1D Compatibility (HY) -16800 + (ID) 4700
Total energy: -116976.0 ( -123.00 by residue)
QMean score : 0.715
(partial model without unconserved sides chains):
PDB file :
Tito_1SEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SEI-query.scw
PDB file :
Tito_Scwrl_1SEI.pdb
: