Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMANQKKKTLPPQHQNQQPGFEYLMDPRPVFDKPKKAKKLEGKTAIITGGDSGIGRAVSVLFAKEGANVVIVYLNEHQDAEETKQYVEKEGVKCLLIAGDVGDEAFCNDVVGQASQVFPSIDILVNNAAEQHVQPSIEKITSHQLIRTFQTNIFSMFYLTKAVLPHL--KKGSSIINTASITAYKGNKTLIDYSATKGAIVTFTRSLSQSLVQQGIRVNAVAPGPIWTPLIPASFAAKDVEVFGSDVPMERPGQPVEVAPSYLYLASDDSTYVTGQTIHVNGGTIVNG
4WJZ Chain:B ((10-247))--------------------------------------LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSES-GAQAISDYLGDNGKGMAL---NVTNPESIEAVLKAITDEFGGVDILVNNA----------------WSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVASVVG-------ANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMT-----EQRTATL-AQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGG-----


General information:
TITO was launched using:
RESULT:

Template: 4WJZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1120 -140231 -125.21 -670.96
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain B : 0.78

3D Compatibility (PKB) : -125.21
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.463

(partial model without unconserved sides chains):
PDB file : Tito_4WJZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4WJZ-query.scw
PDB file : Tito_Scwrl_4WJZ.pdb: