Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHTQLL
4BII Chain:D ((3-269))
--GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGF----LIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHTQLL
General information:
TITO was launched using:
RESULT:
Template:
4BII.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181118 for 2217 contacts (-81.7/contact) +
2D Compatibility (PS) -28950 + (NN) -16433 + (LL) 560
1D Compatibility (HY) -36000 + (ID) 13150
Total energy: -275091.0 ( -124.08 by residue)
QMean score : 0.870
(partial model without unconserved sides chains):
PDB file :
Tito_4BII.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BII-query.scw
PDB file :
Tito_Scwrl_4BII.pdb
: