Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRAKAAPVAGPEVAANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGG-TGIYVVPEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR
3LAP Chain:A ((16-170))
---------------ANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTG-IYVVPE------GVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR
General information:
TITO was launched using:
RESULT:
Template:
3LAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94778 for 1084 contacts (-87.4/contact) +
2D Compatibility (PS) -16836 + (NN) -9910 + (LL) 804
1D Compatibility (HY) -17600 + (ID) 7350
Total energy: -145670.0 ( -134.38 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_3LAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAP-query.scw
PDB file :
Tito_Scwrl_3LAP.pdb
: