Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNTNPVAAWKALKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHVI---DSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGY--VRDVVERVAPSVLLGRRDGLSRVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGVTYQLDDGRAVLRDHIGNIGEEV
4RXY Chain:A ((5-187))
----------QQLFENNVRWAEAIKQ---EDPDFFAKLARQQTPEYLWIGCSDARVPANEIVGMLPGDLFVHRNVANVVLHTDLNCLSVIQFAVDVLKVKHILVTGHYGCGGVRASLHNDQLGLIDGWLRSIRDLAYEYREH-LEQLPTEEERVDRLCELNVIQQVANVSHTSIVQNAWHRGQSLSVHGCIYGIKDG---------------
General information:
TITO was launched using:
RESULT:
Template:
4RXY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127385 for 1275 contacts (-99.9/contact) +
2D Compatibility (PS) -19023 + (NN) -4544 + (LL) 1588
1D Compatibility (HY) -11600 + (ID) 3000
Total energy: -163964.0 ( -128.60 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_4RXY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RXY-query.scw
PDB file :
Tito_Scwrl_4RXY.pdb
: