Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITM-SAPYLSQLRSGNRTNPSGATM-AALANFFRIKAAYFTDDEYYEKLDKELQWLCTM-RDDGVRRIAQRAHGLPSAAQQKVLDRIDELRRAEGIDA
3R1F Chain:A ((3-125))
--TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG-ITMSAPYLSQLRSGNR-TNPSGATMAALANFFRIKAAYFTDDEYYEKLDKELQWLC-TMRDDGVRRIAQRAHGLPSAAQQKVLDRIDELR-------
General information:
TITO was launched using:
RESULT:
Template:
3R1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2296 for 648 contacts (3.5/contact) +
2D Compatibility (PS) -12691 + (NN) -4706 + (LL) 1044
1D Compatibility (HY) 800 + (ID) 2200
Total energy: -15457.0 ( -23.85 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_3R1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R1F-query.scw
PDB file :
Tito_Scwrl_3R1F.pdb
: