Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIRSYQGKTPLLGERVFVDPSAVLVGDIEIGADSSVWPLVVIRGDMHRIRIGQRSSIQDGSVLHITHAGPFNPDGFPLSIGDEVTVGHKVLLHGCSIGNRVLVGMGSIVMDGAVIEDEVILGAGSLVPPGKVLESGFLYVGSPAKKARPLSDKERGFFAYTAGNYVKLKDLHIAEDYHA
1V3W Chain:A ((1-170))
MAIYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSH-------GYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKHIKGRKRI
General information:
TITO was launched using:
RESULT:
Template:
1V3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162109 for 1494 contacts (-108.5/contact) +
2D Compatibility (PS) -19003 + (NN) -10583 + (LL) -332
1D Compatibility (HY) -14000 + (ID) 3400
Total energy: -209427.0 ( -140.18 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_1V3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V3W-query.scw
PDB file :
Tito_Scwrl_1V3W.pdb
: