Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNGSLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGPLDDD
4J1N Chain:A ((22-277))
-GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVG-QFKDRVEKLCAEF--NPAAVLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYHCVSMGNV---
General information:
TITO was launched using:
RESULT:
Template:
4J1N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180283 for 2228 contacts (-80.9/contact) +
2D Compatibility (PS) -28391 + (NN) -14391 + (LL) -108
1D Compatibility (HY) -26800 + (ID) 7850
Total energy: -257823.0 ( -115.72 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_4J1N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J1N-query.scw
PDB file :
Tito_Scwrl_4J1N.pdb
: