Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYE-------RGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGER-QVGAHIKPHSNLLFEIELLEVLTRDD
1PBK Chain:A ((19-115))
-------------------KGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI-----
General information:
TITO was launched using:
RESULT:
Template:
1PBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48102 for 593 contacts (-81.1/contact) +
2D Compatibility (PS) -9610 + (NN) -654 + (LL) 1516
1D Compatibility (HY) -8800 + (ID) 1850
Total energy: -67500.0 ( -113.83 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1PBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PBK-query.scw
PDB file :
Tito_Scwrl_1PBK.pdb
: