Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYVSNCNPCAIHRKINYPNT-KLDFEQVNNITEF-------------------ILLGLTQNAEAQKLLF-----AVFTLIYFLTMVDNLII-VVTITTSPALDSPVYFFLS-FFSFIDGCSSSTMAPKMIFDLLTEKKTISFSGCMTQLFVEHFFGGVEIILLVVMAYD----CYVAICKPLYYLIT--MNRQVCGLLV-----AMAWVGGFLHALIQMLLIVWLP-----------FCGPNVIDHF---------ICDLFPLLKL------SCTDTHVFG----LFVAANSGLMCMLIFSILITSYVLILCSQRKALSTCAFHI-----------------TVVVLFFVP---CILVYL---RPMITFPIDKA---VSV------------FYTVVT----PMLNPLIYTLRNTEVKNAM--KQLWSQIIWGNNLCD |
4R5O Chain:A ((2-427)) | ---DDCEDLHLGNLAHYPNVLKGTFPTESQVLELGETLEITPELLNPEGATYSWLVNGKEYSTEPTFSYKIDNPCRADLSCIIKNKYGKVEMSTSFSSNHNFSKGFFYVADGTFNFYD--TEKKTAYQDCYASLNAGKTLGI-GNYDSANIIHSNG--KFYLLVGTSTSNRDHFYIVDAKTLYYENSAVVGANLSGLTILNEQYGLVTGDGIRRIDLKSLNNVRIKNERLLCFYNSIIYNGKVLSNDTYKDESKVKYYDVNELIAAKEGEAPAVTELDIIQKQKINFVLAKDGNVYTLESADNGCNIVKIKNDFTLEKVFANFQPAKGPYHSSPTIGMVASETENIIYLVSTDGAIYKYILGDSDSLKAPFIAAESGVSITAPLQLNQQSGELYVTYTEERKDESKIVVYSKDGKVLHTVDCGESVPSQILFNN---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R5O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -365615 for 2064 contacts (-177.1/contact) +
2D Compatibility (PS) -34334 + (NN) -2182 + (LL) 444
1D Compatibility (HY) -11600 + (ID) 2950
Total energy: -416237.0 ( -201.67 by residue)
QMean score : 0.179
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