Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKGLLVMDVDSTLIMEEAIDLLAIEAGVGKQVAALTDAAMRGELDFEEALKKRVALLKGLPVTILTDILSSIHFTPGAYELIKECHKRQMKVGLVSGGFHETIDILAKQLQVDYVKANRLGVKGGFLTGEVEGEIVTKEVKKIKLKEWASENHLDLSQTIAMGDGANDLPMIKSAGVGIAFCAKPIVREEAAYQINEKNLLKVFDIIDANEN
3M1Y Chain:A ((2-205))
SLQKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLK----ETDFHKSLILRVSKLKNMPLKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAFNAKEVLKQHATHCINEPDLALIKPL------
General information:
TITO was launched using:
RESULT:
Template:
3M1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106677 for 1697 contacts (-62.9/contact) +
2D Compatibility (PS) -21216 + (NN) -6917 + (LL) 812
1D Compatibility (HY) -15200 + (ID) 3350
Total energy: -152548.0 ( -89.89 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3M1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M1Y-query.scw
PDB file :
Tito_Scwrl_3M1Y.pdb
: