Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIWDAYDQYGFITGLTLNRDQNIPQGLFHLVVDVILFH---EDGDVLMMKRHPKKKAFPAYFEATAGGSALK--GENAKQAILRELKEETGIVPQCLTFLNREWFS----ERSYFVDHFIAKYNGAKDIITLQEGETVDYIWLKPEYIDLFLSKNKLIPSQIKLLKSLI
3GZ5 Chain:A ((21-139))
----------------------------QLLTVDAVLFTYHDQQLKVLLVQRSNH--PFLGLWGLP-GGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRDARGWSVTVCYTALMSY--QACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLT
General information:
TITO was launched using:
RESULT:
Template:
3GZ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57466 for 743 contacts (-77.3/contact) +
2D Compatibility (PS) -11805 + (NN) -2917 + (LL) 2068
1D Compatibility (HY) -6000 + (ID) 1250
Total energy: -77370.0 ( -104.13 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_3GZ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GZ5-query.scw
PDB file :
Tito_Scwrl_3GZ5.pdb
: