Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNRDFRVRDQLETFGVRVSALIIENQKLLLIYAPHLDKYYLPGGALQVGEDSNKAVAREVLEEIGLHSQVGDLAYIVENQFNIK-RHHYHSVEFLYFVNLLGQAPESIKEGTHKRHFVWLPIKELTKIDCNPNFLAQDLIEWPGHVVHKIVQN
3Q1P Chain:A ((65-193))
------------QTPKVDIRAVVFQNEKLLFVKE---GKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGG-EKKT--SIETEEVEFFGENELPNLSIAR-NTEDQIKEMFAYMKDPQKEK
General information:
TITO was launched using:
RESULT:
Template:
3Q1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80370 for 912 contacts (-88.1/contact) +
2D Compatibility (PS) -13700 + (NN) -2030 + (LL) 1272
1D Compatibility (HY) -6000 + (ID) 1350
Total energy: -102178.0 ( -112.04 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_3Q1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q1P-query.scw
PDB file :
Tito_Scwrl_3Q1P.pdb
: