Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKPILIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQSKSYSLVFTDQNMPNMDGLSLIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLLEVTRKVLP
3DGE Chain:C ((1-120))
MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN
General information:
TITO was launched using:
RESULT:
Template:
3DGE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49690 for 939 contacts (-52.9/contact) +
2D Compatibility (PS) -12944 + (NN) -7554 + (LL) 0
1D Compatibility (HY) -12000 + (ID) 2100
Total energy: -84288.0 ( -89.76 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_3DGE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DGE-query.scw
PDB file :
Tito_Scwrl_3DGE.pdb
: