Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSH---VEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLD----SPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDY-----KDFKLLTEY-------PGVPADIQEEDGIQYKFEVYQKSVLAQ
3NZB Chain:X ((4-205))
QKSLTLIVALTTSYGIGRSNSLPWK-LKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSE-SSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRD----
General information:
TITO was launched using:
RESULT:
Template:
3NZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97289 for 1316 contacts (-73.9/contact) +
2D Compatibility (PS) -19611 + (NN) -6073 + (LL) 596
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -138677.0 ( -105.38 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_3NZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NZB-query.scw
PDB file :
Tito_Scwrl_3NZB.pdb
: