Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGGEAPQEPQS
3UBW Chain:A ((30-259))
-DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWT-----------------
General information:
TITO was launched using:
RESULT:
Template:
3UBW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72554 for 1799 contacts (-40.3/contact) +
2D Compatibility (PS) -24748 + (NN) -10111 + (LL) 316
1D Compatibility (HY) -24000 + (ID) 7150
Total energy: -138247.0 ( -76.85 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_3UBW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UBW-query.scw
PDB file :
Tito_Scwrl_3UBW.pdb
: