Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------MDLPPQLSFGLYVAAF----ALGFPLNVLAIRGATAHARLRLTPSLVYALNLGCSDLLLTVSLPLKAVEALASGAWPLPASLCPVFAVAHFFPLYAGGGFLAALSAGRYLGAAFPLGYQAFRRPCYSWGVCAAIWALVLCHLGLVFGLEAPGGWLDHSNTSLGINTPVNGSPVCLEAW--DPASAGPARFSLSLLL--FFLPLAITAFCYVGCLRALAR-------SGLTHRRKLRAAWVAGGALLTLLLCVGPYNASNVASFLYPN--LGGSWRKLGLITGAWSVVLNPLVTGYL---GRGPGLKTVCAARTQGGKSQK--------------- |
| 1U19 Chain:A ((4-349)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLR-TPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQC--------SCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203944 for 2250 contacts (-90.6/contact) +
2D Compatibility (PS) -28912 + (NN) -5063 + (LL) 16
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -242103.0 ( -107.60 by residue)
QMean score : 0.176
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