Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNKYYDSNNIFAQILRGELPCKKVYEDEDVLAFYDKYPDAPVHILVVPKSQYISYDDFIFKASAEEIVGFFKTVREITYKYNLEKTGYRLVTNCGENGEQVVPHFHMHILGGKRLGKHVNL
3O1C Chain:A ((12-126))
----RPGGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDA-DESLLGHLMIVGKKCAADLG-LKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG-
General information:
TITO was launched using:
RESULT:
Template:
3O1C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64340 for 826 contacts (-77.9/contact) +
2D Compatibility (PS) -12666 + (NN) -8392 + (LL) 660
1D Compatibility (HY) -4800 + (ID) 1850
Total energy: -91388.0 ( -110.64 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3O1C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O1C-query.scw
PDB file :
Tito_Scwrl_3O1C.pdb
: