Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MLRIIAGKYRGRRIATGKHLAARPTMSIVREAVFNILSSKKIIYNLNILDLFCGSGSFSFEALSRGAKHAFIVD-LDYYNLQLPEKTAKDLGITDSITLICCSA-NALPKPVSKCDIVFIDPPYYSNLVNSTLDGLANSGWLSDDALIILEVRKNEDF-QCSKNFSVILERTYGIARIIFLSLST-
2FPO Chain:D ((12-194))
GQIRIIGGQWRGRKLPVPD----SPGTDRVRETLFNWLAPV--IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA--GNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAGQVAYRLYQREAQ
General information:
TITO was launched using:
RESULT:
Template:
2FPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145532 for 1400 contacts (-104.0/contact) +
2D Compatibility (PS) -18917 + (NN) -6495 + (LL) 1032
1D Compatibility (HY) -10000 + (ID) 2700
Total energy: -182612.0 ( -130.44 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_2FPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FPO-query.scw
PDB file :
Tito_Scwrl_2FPO.pdb
: