Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MERVLITGGAGFIGSHLVDDL-QQDYDVYVLDNYRTGKRENIKSLADDHVFELDIREYDAVEQIMKTYQFDYVIHLAALVSVAESVEKPILSQEINVVATLRLLEIIKKYNSHIKRFIFASSAAVYGDLPDLPKSDQSLILPLSPYAIDKYYGERTTLNYCSLYNIPTAVVKFFNVFGPRQDPKSQYSGVISKMFDSFEHN-KPFTFFGDGLQTRDFVYVYDVVQSVRLIM---EHKDAIGHGYNIGTGTFTNLLEVYRIIGELYGKSVEHEF-KEARKGDIKHSYADISNL-KALGFVPKYTVETGLKDYFNFEVDNIEEVTAKEVEMS |
3KO8 Chain:A ((2-300)) | --RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHV--RDLKDYSWGAGI----KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQ--TGVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLR-----HGVIYDFIMKLRRNPNVLEVL----QRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLV-----GDVKYMTLAVTKLMKLTGWRPTMTSAEAVK--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KO8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194303 for 2456 contacts (-79.1/contact) +
2D Compatibility (PS) -28378 + (NN) -418 + (LL) 3100
1D Compatibility (HY) -19200 + (ID) 4800
Total energy: -243999.0 ( -99.35 by residue)
QMean score : 0.488
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