Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEWSQIFHDITTKHDFKAMHDFLEKEYS-TAIVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVR-QTPHLQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANAYLESVGKSPINWCESEA
3TR7 Chain:A ((8-225))
QTWQTVLGEEKQEPYFQEILDFVKKERKAGKIIYPPQKDIFNALKLTPYEAIKVVILGQDPYHGPNQAHGLAFSVRPGVPAPPSLQNIFKELHADLGVSIPSHGFLEKWAKQGVLLLNAALTVEAGKPQSHANIGWHRFTDKVIESLNDHPEGIVFLLWGSYAQKKSQLITNLRHRILKAPHPSPLSAARGFLGCRHFSKANQLLHEMGRGEIDWALD--
General information:
TITO was launched using:
RESULT:
Template:
3TR7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110019 for 1735 contacts (-63.4/contact) +
2D Compatibility (PS) -23316 + (NN) -10130 + (LL) 76
1D Compatibility (HY) -18800 + (ID) 5150
Total energy: -167339.0 ( -96.45 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_3TR7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR7-query.scw
PDB file :
Tito_Scwrl_3TR7.pdb
: