Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
3D4W Chain:A ((6-137))
------------------------------------------------------------------------------------KLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPEFN------EKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLRKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWSED------
General information:
TITO was launched using:
RESULT:
Template:
3D4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41117 for 1028 contacts (-40.0/contact) +
2D Compatibility (PS) -14071 + (NN) -2507 + (LL) 5928
1D Compatibility (HY) -16000 + (ID) 6300
Total energy: -74067.0 ( -72.05 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_3D4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D4W-query.scw
PDB file :
Tito_Scwrl_3D4W.pdb
: