Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
1YJ3 Chain:A ((47-284))
--VQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLV-DRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLV-VLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTG----------
General information:
TITO was launched using:
RESULT:
Template:
1YJ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69530 for 2091 contacts (-33.3/contact) +
2D Compatibility (PS) -26710 + (NN) -14843 + (LL) 1436
1D Compatibility (HY) -14000 + (ID) 4450
Total energy: -128097.0 ( -61.26 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_1YJ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YJ3-query.scw
PDB file :
Tito_Scwrl_1YJ3.pdb
: