Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFYTYSGETAAEALKIAQSHHGVDTLVFKTQEIRKKTLTSSGLYEIVVAVEEEENKKAPLIPESLYDEELNEEDVVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEKDAPLEDTPLEANKQDALLQALKDEANHKKEREKREVKQEEEIKDINAQLSKIRDSLKLIQNMFWDEKNPNSVNIPQEFAEIYKLAKQSGMKSSHLDEIMQLSLELMPLRMRENSVTIKRYF-REVLRKIIL-CR---PE-DLNLRQKRILMLVGPTGVGKTTTLAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDF----AKEIEAL--EYCDFILVDTTGHSQYDK--EKIAGLKEFIDGGYNIDVSLVLSVTTKYEDMKDIYDSFGV-LGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVDCMLDGFSNPNKEQA |
| 1J8M Chain:F ((27-295)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK-AYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKI-DELEVFNPRRFVARLHHHH-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1J8M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -128667 for 2086 contacts (-61.7/contact) +
2D Compatibility (PS) -27454 + (NN) -12060 + (LL) 13976
1D Compatibility (HY) -12400 + (ID) 3050
Total energy: -169655.0 ( -81.33 by residue)
QMean score : 0.514
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